Hydrogen Alpha Explained
The picture below shows a typical view of the sun as seen through a hydrogen
alpha dedicated telescope or hydrogen alpha filter.

Why
Hydrogen?
The sun contains many elements but the most abundant by far is hydrogen. The
visible layers (the photosphere and the chromosphere)
is the only part of the sun that is cool enough for hydrogen to exist in it's atomic form and it is here that we can see the absorption
and emission spectra for hydrogen.
It is helpful to think of a hydrogen atom as a small 'solar system' with the
heavy nucleus as the 'sun' in the middle. This particular solar system has only
one planet orbiting - ie a single electron. Due to the
laws of quantum physics, this electron can only orbit the nucleus in specific
orbits which are given a number n.
When electrons jump from the lower to the higher number
orbits, they absorb a particular amount of energy and we can observe the
absorption spectrum. When they fall back again they release the same amount of
energy and we can observe the emission spectrum. The amount of energy absorbed
or released in this way can be mathematically directly related to the
wavelength at which we see the absorption
and emission lines on the spectrum.
Hydrogen can absorb and emit in the ultraviolet region of the spectrum (the
Lyman series) but the emissions and absorptions we see in the visible part of
the spectrum are the Balmer series and occur when
electrons jump from and fall to the n=2 orbit.
Why
Alpha?
The Balmer series lines that we see are imaginatively call
alpha, beta, gamma.... and so looking at the diagram below you can see the
whole picture...

The line that appears in the red part of the spectrum is created when an
electron moves between the second and third orbit (N=2 and N=3) and the
wavelength at which this occurs is 656nm. It is this line that is called the
Hydrogen alpha line and hydrogen alpha filters are designed to block out as
much of the spectrum as possible leaving only a very small bandwidth through
which light can pass at the H-alpha frequency.
Hydrogen Alpha filters typically have a bandpass in
the region of 0.5Å to 1Å (Å = Angstrom) where 1Å is 0.1nm.